This example demonstrates how you can send a BioJava structure object to. Use the search box to search using the name of a molecule or click on one of the buttons below. It is possible to read the bond lengths and bond angles from the images. It is available from the download page of the web site (). Jmol is a popular open source 3D viewer written in Java. Jmol 13. It can retrieve structural data on molecules from databases and plot the molecules in three dimensions. Alternatively, ANTHEPROT 3D can be used as an external program fully independant from the global package. This module allows fully interactive handling of high-quality 3D structures with various modes of representation (CA sticks, wireframe, ball and sticks, spacefill mod-els as well as surface, ribbons, Ramachandran plots). Protein Sequence Analysis Structural Bioinformatics Software 3D StructuresĪBSTRACT: In this paper, I will describe a completely new 3D module which can be called from within the well known ANTHEPROT program devoted to protein sequences analysis. Go to the Jmol website and download a copy of the latest version of Jmol. source Java viewer for chemical structures in 3D. Īn interactive 3D viewer of molecules compatible with the suite of ANTHEPROT programs Before you can get started with learning how use Jmol, you must first obtain a copy of the program, along with a file containing the atomic coordinates of a molecule that wish to view with Jmol. Tip: right-mouse click on Jmol to get access to additional Jmol functionality. Jmol: An open-source Java viewer for chemical structures in 3D.
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